{ "general_settings": {}, "id": "scaffold creator settings", "metadata": { "annotations": [ { "id": "ILX:0774405", "name": "apex of urinary bladder" }, { "id": "UBERON:0009958", "name": "bladder lumen" }, { "id": "ILX:0738433", "name": "dome of the bladder" }, { "id": "ILX:0778155", "name": "dorsal part of bladder" }, { "id": "ILX:0739250", "name": "dorsal part of lumen of body of urinary bladder" }, { "id": "ILX:0739255", "name": "dorsal part of lumen of neck of urinary bladder" }, { "id": "ILX:0739278", "name": "dorsal part of serosa of body of urinary bladder" }, { "id": "ILX:0739280", "name": "dorsal part of serosa of neck of urinary bladder" }, { "id": "ILX:0739248", "name": "dorsal part of serosa of urinary bladder" }, { "id": "ILX:0777128", "name": "dorsal part of urinary bladder lumen" }, { "id": "ILX:0778142", "name": "left ureter junction with bladder" }, { "id": "ILX:0739252", "name": "lumen of body of urinary bladder" }, { "id": "ILX:0739256", "name": "lumen of neck of urinary bladder" }, { "id": "UBERON:0001258", "name": "neck of urinary bladder" }, { "id": "ILX:0778143", "name": "right ureter junction with bladder" }, { "id": "ILX:0739276", "name": "serosa of body of urinary bladder" }, { "id": "ILX:0739277", "name": "serosa of neck of urinary bladder" }, { "id": "UBERON:0001260", "name": "serosa of urinary bladder" }, { "id": "UBERON:0001255", "name": "urinary bladder" }, { "id": "ILX:0778156 ", "name": "ventral part of bladder" }, { "id": "ILX:0739251", "name": "ventral part of lumen of body of urinary bladder" }, { "id": "ILX:0739257", "name": "ventral part of lumen of neck of urinary bladder" }, { "id": "ILX:0739279", "name": "ventral part of serosa of body of urinary bladder" }, { "id": "ILX:0739281", "name": "ventral part of serosa of neck of urinary bladder" }, { "id": "ILX:0739249", "name": "ventral part of serosa of urinary bladder" }, { "id": "ILX:0777129", "name": "ventral part of urinary bladder lumen" } ] }, "scaffold_settings": { "deleteElementRanges": "", "scaffoldPackage": { "_ScaffoldPackage": true, "rotation": [ 0.0, 0.0, 0.0 ], "scaffoldSettings": { "Central path": { "_ScaffoldPackage": true, "meshEdits": "EX Version: 3\nRegion: /\n!#nodeset nodes\nDefine node template: node1\nShape. Dimension=0\n#Fields=1\n1) coordinates, coordinate, rectangular cartesian, real, #Components=3\n x. #Values=6 (value,d/ds1,d/ds2,d2/ds1ds2,d/ds3,d2/ds1ds3)\n y. #Values=6 (value,d/ds1,d/ds2,d2/ds1ds2,d/ds3,d2/ds1ds3)\n z. #Values=6 (value,d/ds1,d/ds2,d2/ds1ds2,d/ds3,d2/ds1ds3)\nNode template: node1\nNode: 1\n 2.000000000000000e+00 -2.924000000000000e-01 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00\n 0.000000000000000e+00 0.000000000000000e+00 -2.707900000000000e-01 -2.649600000000000e-01 0.000000000000000e+00 0.000000000000000e+00\n 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00 5.383500000000000e-01 1.434400000000000e-01\nNode: 2\n 1.701130000000000e+00 -3.053400000000000e-01 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00\n 0.000000000000000e+00 0.000000000000000e+00 -4.679700000000000e-01 -1.293900000000000e-01 0.000000000000000e+00 0.000000000000000e+00\n 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00 6.771100000000000e-01 1.340600000000000e-01\nNode: 3\n 1.389310000000000e+00 -3.141000000000000e-01 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00\n 0.000000000000000e+00 0.000000000000000e+00 -5.266300000000000e-01 -3.310000000000000e-03 0.000000000000000e+00 0.000000000000000e+00\n 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00 8.062800000000000e-01 1.150000000000000e-03\nNode: 4\n 1.072920000000000e+00 -3.056500000000000e-01 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00\n 0.000000000000000e+00 0.000000000000000e+00 -4.737700000000000e-01 8.253000000000001e-02 0.000000000000000e+00 -0.000000000000000e+00\n 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00 -0.000000000000000e+00 6.775300000000000e-01 -1.333200000000000e-01\nNode: 5\n 7.780100000000000e-01 -2.922800000000000e-01 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00\n 0.000000000000000e+00 0.000000000000000e+00 -3.635800000000000e-01 1.093500000000000e-01 0.000000000000000e+00 -0.000000000000000e+00\n 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00 -0.000000000000000e+00 5.399400000000000e-01 -1.549000000000000e-01\nNode: 6\n 4.883600000000000e-01 -2.669200000000000e-01 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00\n 0.000000000000000e+00 0.000000000000000e+00 -2.550400000000000e-01 9.572000000000000e-02 0.000000000000000e+00 -0.000000000000000e+00\n 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00 -0.000000000000000e+00 3.680400000000000e-01 -1.627600000000000e-01\nNode: 7\n 2.441800000000000e-01 -2.441800000000000e-01 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00\n 0.000000000000000e+00 0.000000000000000e+00 -1.701300000000000e-01 7.176000000000000e-02 0.000000000000000e+00 -0.000000000000000e+00\n 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00 -0.000000000000000e+00 2.129800000000000e-01 -1.361600000000000e-01\nNode: 8\n 0.000000000000000e+00 -2.441800000000000e-01 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00\n 0.000000000000000e+00 0.000000000000000e+00 -1.115300000000000e-01 4.545000000000000e-02 0.000000000000000e+00 -0.000000000000000e+00\n 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00 -0.000000000000000e+00 9.572000000000000e-02 -9.837000000000000e-02\nGroup name: meshEdits\n!#nodeset nodes\nNode group:\n1..8\n", "rotation": [ 0.0, 0.0, 0.0 ], "scaffoldSettings": { "Coordinate dimensions": 3, "D2 derivatives": true, "D3 derivatives": true, "Length": 1.0, "Number of elements": 7 }, "scaffoldTypeName": "1D Path 1", "scale": [ 1.0, 1.0, 1.0 ], "translation": [ 0.0, 0.0, 0.0 ], "userAnnotationGroups": [ { "_AnnotationGroup": true, "dimension": 1, "identifierRanges": "1-4", "name": "dome of the bladder", "ontId": "ILX:0738433" }, { "_AnnotationGroup": true, "dimension": 1, "identifierRanges": "5-7", "name": "neck of urinary bladder", "ontId": "UBERON:0001258" } ] }, "Number of elements along dome": 8, "Number of elements along neck": 4, "Number of elements around": 8, "Number of elements through wall": 1, "Refine": false, "Refine number of elements along": 4, "Refine number of elements around": 4, "Refine number of elements through wall": 1, "Ureter position around": 0.67, "Use linear through wall": true, "Wall thickness": 0.043 }, "scaffoldTypeName": "3D Bladder 1", "scale": [ 1.0, 1.0, 1.0 ], "translation": [ 0.0, 0.0, 0.0 ] } }, "segmentation_data_settings": {}, "version": "1.0.0" }